Yes the seismicity has crossed my mind as well. I remember it was mentioned a couple or so years ago by one of the Aussie posters WRT to spatial accuracy requirements between transmitting and receiving stations. If such is true then, for example a transmitting station in the South Island east of the Pacific - Australian plate boundary and the receiving station anywhere in the North Island will have spatial anomalies, in three dimensions, at all times because of the plate movements. For example, Christchurch moves towards the West Coast at 4cm per year as the Pacific plate is subducted under the Australian plate, but at the plate boundary along the Southern Alps Alpine Fault, the fault is actually a horizontal strike slip fault, where the plates are sliding horizontally against each other. Go north and south its subduction again.No, though the latitude might impact performance as well, particularly during solar events. Rather it is mostly NZ's seismic activity which I could as being problematic, coupled with some of the magnetic anomalies which are to be found in and around NZ.
Of course these concerns might also be unfounded, since the JORN system's tolerances might be able to either account or compensate for issues caused. It is the sort of level of detail that I would be shocked if it came into the public domain.
WRT to the magnetic anomalies, are you referring to the Stokes Magnetic Anomaly System and Campbell Magnetic Anomaly System, and would they impact upon the JORN signals at all? They are mineral based magnetic systems rather than the energetic planetary one that surrounds and protects the Earth. It's an interesting question and geophysics isn't my field.