If a missile took out the bow or aft launcher to the extent where it wasnt able to used and beyond repair, the ship itself would be rendered useless. In fact if a missile was to hit a ship with either aft and bow launchers then the ammo inside would explode and destroy that part of the ship. It certainly not going to make much difference based on this situation.
Check out Swerve's posts regarding RN ships struck during the Falklands. Also I'd advise looking into the results of the various Sinkex exercises that have been done. One thing that has come out of that is that an AShM very rarely is able to actually sink a warship. What they often are able to do though is achieve a "mission-kill" where the missile damages a vessel enough so that it is no longer able to function sufficiently to participate in an operation.
IMV by having VLS cells in two different locations on a ship, the Baby Burke is doing two things.
1. Making it more likely that some VLS capacity would be lost in the event of damage to the vessel.
2. Similarly, making it more likely that if the vessel is damaged, it retains some VLS capacity.
As for being able to hand off air defence to the Anzacs, I don't consider that reasonable or viable. The upgraded Anzacs carrying 32 ESSM with 1 (or is it 2?) illuminators. ESSM from what I've read has been quoted as having various effective ranges up to 20+ km, but in the USN it is being used more as a short/point-defense SAM. To me, that says that the ESSM should be saved and used to intercept any leakers that penetrate a mid to long-range SAM umbrella. It also indicates, at least to me, that having the AWD carry primarily quadpack ESSM would be ineffective. Especially if there is only 1 illuminator aboard the F-100. A better missile mix assuming 48 Mk-41 VLS cells IMV would be either 40 SM-2 & 32 ESSM, or 32 SM-2 & 64 ESSM. Now, if an idea I'd mentioned for also having the F-100 design incorporate duo-pack ESSM in Mk 56 VLS cells edging the hangar, in addition to to 48 Mk-41 VLS cells that could be a bit different.
An important item to consider with regards to the numbers of available VLS cells. It is unlikely that all the VLS cell missiles would be expended at once unless things went south (or from an antipodean perspective would that be north?:unknown ) very quickly. Depending on the occasion though, it might well happen that all of one type Mk-41 VLS missile could be expended if only limited numbers of different missiles are carried. One reason why I was in favor of the G&C design is the larger number of cells aboard, allowing more missile flexibility. As it stands now, the F-100 looks likely to carry 8 Harpoon and 48 Mk-41 VLS cells, which means it most likely wouldn't have cells available for TLAM or ASROC. Not being able to carry ASROC means any onboard ASW capability is restricted to 6 lightweight ASW torpedoes (MU-90 likely) and whatever the heli can carry, when it's available to deploy.
I just hope it doesn't indicate a ship philosophy on the part of the RAN like the RN had during the 70's and up until the Falklands Conflict. As was found during the Falklands Conflict, because of the kit used aboard different ships, in order provide Area Air Defence, two different classes needed to deploy together to cover both high and low altitude attacks. This had come about because RN ships were designed specifically to combat Soviet/Warsaw Pact equipment and doctrine. As a result of tailoring the RN to fight the Soviet forces, some of the vessels were less useful in general operations.
Hopefully the RAN will not run into a similar issue.
-Cheers